Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Gene: SOHLH2 ENSBTAG00000018955

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Description

spermatosis and oosis specific basic helix-loop-helix 2 [Source:VGNC Symbol;Acc:VGNC:110068]

Location

Primary_assembly 12: 25,237,542-25,303,416 forward strand.

ARS-UCD2.0:CM008179.2

About this gene

This gene has 3 transcripts (splice variants) and 86 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000025231.7	SOHLH2-201	2386	446aa	ENSBTAP00000025231.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MTG6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000092123.2	SOHLH2-202	2354	426aa	ENSBTAP00000103075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TZR5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000106306.2	SOHLH2-203	2255	393aa	ENSBTAP00000096458.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TCR6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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