Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: HIF3A ENSBTAG00000018948

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Description

hypoxia inducible factor 3 subunit alpha [Source:VGNC Symbol;Acc:VGNC:29850]

Location

Primary_assembly 18: 53,558,971-53,590,521 forward strand.

ARS-UCD2.0:CM008185.2

About this gene

This gene has 4 transcripts (splice variants), 189 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000077844.2	HIF3A-202	4981	688aa	ENSBTAP00000071359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MKG5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000025217.7	HIF3A-201	4761	669aa	ENSBTAP00000025217.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6RL11	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000116112.1	HIF3A-204	4524	600aa	ENSBTAP00000079209.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S031	-
ENSBTAT00000077826.2	HIF3A-203	1272	424aa	ENSBTAP00000059056.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LUX8	-

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Summary

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