Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: APLF ENSBTAG00000018401

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Description

aprataxin and PNKP like factor [Source:VGNC Symbol;Acc:VGNC:59203]

Location

Primary_assembly 11: 66,865,005-66,958,571 forward strand.

ARS-UCD2.0:CM008178.2

About this gene

This gene has 5 transcripts (splice variants) and 179 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000098254.2	APLF-202	1722	510aa	ENSBTAP00000075149.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RVN1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000044615.3	APLF-204	2805	485aa	ENSBTAP00000042099.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0JNH9	-
ENSBTAT00000063133.4	APLF-203	2002	509aa	ENSBTAP00000055056.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MZQ3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000114855.2	APLF-201	1954	488aa	ENSBTAP00000096315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TGZ8	-
ENSBTAT00000117368.2	APLF-205	1798	493aa	ENSBTAP00000097226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TLQ3	-

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Summary

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