Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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Gene: CNOT4 ENSBTAG00000017919

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Description

CCR4-NOT transcription complex subunit 4 [Source:VGNC Symbol;Acc:VGNC:27519]

Location

Primary_assembly 4: 99,183,277-99,335,667 reverse strand.

ARS-UCD1.3:CM008171.2

About this gene

This gene has 3 transcripts (splice variants) and 239 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000071100.2	CNOT4-201	3435	713aa	ENSBTAP00000065146.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N546	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000082842.2	CNOT4-203	3021	575aa	ENSBTAP00000065174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N553	-
ENSBTAT00000023825.6	CNOT4-202	2480	642aa	ENSBTAP00000023825.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MWA7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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