Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
Phenotypes
Genetic Variation
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ID History
- Gene history

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Gene: SLC39A9 ENSBTAG00000017811

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Description

solute carrier family 39 member 9 [Source:VGNC Symbol;Acc:VGNC:34869]

Location

Primary_assembly 10: 81,185,447-81,229,934 forward strand.

ARS-UCD1.3:CM008177.2

About this gene

This gene has 5 transcripts (splice variants) and 206 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000124421.1	SLC39A9-201	3687	368aa	ENSBTAP00000096183.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000023676.6	SLC39A9-202	3522	313aa	ENSBTAP00000023676.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MY37	-
ENSBTAT00000098983.1	SLC39A9-203	3453	290aa	ENSBTAP00000082420.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000101115.1	SLC39A9-204	3324	247aa	ENSBTAP00000101992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000087743.1	SLC39A9-205	1378	238aa	ENSBTAP00000080926.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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