Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PAXIP1 ENSBTAG00000017505

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Description

PAX interacting protein 1 [Source:VGNC Symbol;Acc:VGNC:32602]

Location

Primary_assembly 4: 116,913,296-116,954,800 reverse strand.

ARS-UCD1.3:CM008171.2

About this gene

This gene has 5 transcripts (splice variants), 209 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000023287.7	PAXIP1-202	4185	1047aa	ENSBTAP00000023287.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0JNA8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000064484.3	PAXIP1-201	4129	998aa	ENSBTAP00000055051.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3MZP9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000096722.1	PAXIP1-205	754	152aa	ENSBTAP00000081969.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000090024.1	PAXIP1-203	721	170aa	ENSBTAP00000084384.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000111165.1	PAXIP1-204	547	138aa	ENSBTAP00000093100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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