Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: RUNX1T1 ENSBTAG00000017339

.

Description

RUNX1 partner transcriptional co-repressor 1 [Source:VGNC Symbol;Acc:VGNC:55756]

Location

Primary_assembly 14: 72,301,287-72,458,757 forward strand.

ARS-UCD2.0:CM008181.2

About this gene

This gene has 6 transcripts (splice variants), 211 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000090597.1	RUNX1T1-205	7259	606aa	ENSBTAP00000090324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T181	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000071803.1	RUNX1T1-203	7485	603aa	ENSBTAP00000072155.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MDD5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000083693.3	RUNX1T1-201	7423	583aa	ENSBTAP00000067659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MBK5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000064358.3	RUNX1T1-204	7389	581aa	ENSBTAP00000055947.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3N242	-
ENSBTAT00000097158.2	RUNX1T1-202	7354	560aa	ENSBTAP00000081943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SHH3	-
ENSBTAT00000023058.8	RUNX1T1-206	3446	576aa	ENSBTAP00000023058.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N0Y4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

.

Summary

.

.