Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PDLIM3 ENSBTAG00000017183

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Description

PDZ and LIM domain 3 [Source:VGNC Symbol;Acc:VGNC:32709]

Location

Primary_assembly 27: 15,712,971-15,743,778 reverse strand.

ARS-UCD1.3:CM008194.2

About this gene

This gene has 4 transcripts (splice variants), 226 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000074205.2	PDLIM3-202	1648	364aa	ENSBTAP00000074391.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MQS4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000022835.3	PDLIM3-203	1504	316aa	ENSBTAP00000022835.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3SYZ8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000075462.2	PDLIM3-204	1384	276aa	ENSBTAP00000062470.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LYV9	-
ENSBTAT00000102964.1	PDLIM3-201	1109	197aa	ENSBTAP00000083771.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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