Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: ZBTB40 ENSBTAG00000016448

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Description

zinc finger and BTB domain containing 40 [Source:VGNC Symbol;Acc:VGNC:37079]

Location

Primary_assembly 2: 130,297,461-130,347,446 reverse strand.

ARS-UCD1.3:CM008169.2

About this gene

This gene has 3 transcripts (splice variants) and 178 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000021869.7	ZBTB40-201	4026	1237aa	ENSBTAP00000021869.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N193	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000101172.1	ZBTB40-203	4727	1169aa	ENSBTAP00000089258.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000106006.1	ZBTB40-202	3678	1121aa	ENSBTAP00000103627.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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