Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: FOXJ3 ENSBTAG00000015887

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Description

forkhead box J3 [Source:VGNC Symbol;Acc:VGNC:29091]

Location

Primary_assembly 3: 103,880,787-104,003,584 forward strand.

ARS-UCD1.3:CM008170.2

About this gene

This gene has 10 transcripts (splice variants), 162 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000060940.4	FOXJ3-208	3103	643aa	ENSBTAP00000053827.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BK17	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000124894.1	FOXJ3-201	3203	610aa	ENSBTAP00000086987.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000132658.1	FOXJ3-209	2974	600aa	ENSBTAP00000102725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000084389.2	FOXJ3-210	2947	591aa	ENSBTAP00000056698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LJR0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000079741.2	FOXJ3-207	1780	202aa	ENSBTAP00000070999.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NGP0	-
ENSBTAT00000128505.1	FOXJ3-205	1277	197aa	ENSBTAP00000087548.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000106426.1	FOXJ3-204	1113	206aa	ENSBTAP00000080691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000126206.1	FOXJ3-206	992	204aa	ENSBTAP00000093093.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000124837.1	FOXJ3-202	968	200aa	ENSBTAP00000088047.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000067256.2	FOXJ3-203	828	174aa	ENSBTAP00000067014.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M934	-

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Summary

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