Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NISCH ENSBTAG00000014779

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Description

nischarin [Source:VGNC Symbol;Acc:VGNC:32088]

Location

Primary_assembly 22: 48,370,388-48,434,240 reverse strand.

ARS-UCD1.3:CM008189.2

About this gene

This gene has 4 transcripts (splice variants), 209 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000019661.6	NISCH-201	5564	1508aa	ENSBTAP00000019661.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N322	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000108120.1	NISCH-202	5294	1490aa	ENSBTAP00000082852.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000112048.1	NISCH-203	5135	1500aa	ENSBTAP00000090725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000122749.1	NISCH-204	2809	518aa	ENSBTAP00000078145.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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