Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: OTX2 ENSBTAG00000014741

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Description

orthodenticle homeobox 2 [Source:VGNC Symbol;Acc:VGNC:32503]

Location

Primary_assembly 10: 69,215,622-69,224,652 reverse strand.

ARS-UCD2.0:CM008177.2

About this gene

This gene has 4 transcripts (splice variants), 205 orthologues and 44 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000120053.1	OTX2-201	1540	297aa	ENSBTAP00000092137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T066	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000019616.6	OTX2-202	1516	289aa	ENSBTAP00000019616.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BNP1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000114079.1	OTX2-203	1308	35aa	ENSBTAP00000099915.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TTP9	-
ENSBTAT00000124428.1	OTX2-204	706	168aa	ENSBTAP00000092987.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T586	-

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Summary

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