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- Splice variants
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Gene: RFC1 ENSBTAG00000014515

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Description

replication factor C subunit 1 [Source:VGNC Symbol;Acc:VGNC:106894]

Location

Primary_assembly 6: 58,429,957-58,554,108 reverse strand.

ARS-UCD2.0:CM008173.2

About this gene

This gene has 4 transcripts (splice variants) and 219 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000076791.2	RFC1-201	3608	1125aa	ENSBTAP00000065608.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N5S1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000066704.2	RFC1-203	4512	1103aa	ENSBTAP00000065393.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N5F1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000079869.2	RFC1-204	4329	1042aa	ENSBTAP00000065291.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M5T3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000140600.1	RFC1-202	4308	1035aa	ENSBTAP00000104302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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