Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: FOXA1 ENSBTAG00000013888

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Description

forkhead box A1 [Source:VGNC Symbol;Acc:VGNC:29077]

Location

Primary_assembly 21: 47,772,978-47,787,583 reverse strand.

ARS-UCD2.0:CM008188.2

About this gene

This gene has 4 transcripts (splice variants), 145 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000116769.1	FOXA1-202	8093	435aa	ENSBTAP00000095233.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MNS7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000092226.1	FOXA1-201	6625	435aa	ENSBTAP00000079817.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MNS7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000090509.1	FOXA1-204	5402	435aa	ENSBTAP00000076956.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MNS7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000061052.4	FOXA1-203	4380	435aa	ENSBTAP00000053401.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MNS7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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