Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SIPA1 ENSBTAG00000013884

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Description

signal-induced proliferation-associated 1 [Source:VGNC Symbol;Acc:VGNC:34627]

Location

Primary_assembly 29: 43,816,349-43,828,086 forward strand.

ARS-UCD2.0:CM008196.2

About this gene

This gene has 4 transcripts (splice variants), 174 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000113278.1	SIPA1-202	3822	1082aa	ENSBTAP00000094198.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TDI5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000018435.6	SIPA1-203	3532	1074aa	ENSBTAP00000018435.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6DM17	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000066483.2	SIPA1-201	3457	1008aa	ENSBTAP00000068819.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MI55	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000105133.1	SIPA1-204	3163	941aa	ENSBTAP00000100343.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TSL0	-

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Summary

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