Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ATG4A ENSBTAG00000013724

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Description

autophagy related 4A cysteine peptidase [Source:VGNC Symbol;Acc:VGNC:26257]

Location

Primary_assembly X: 56,719,914-56,800,060 forward strand.

ARS-UCD1.3:CM008197.2

About this gene

This gene has 5 transcripts (splice variants), 162 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000079503.2	ATG4A-201	1734	460aa	ENSBTAP00000070578.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MME8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000079933.2	ATG4A-204	1530	428aa	ENSBTAP00000062460.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LIV4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000082183.2	ATG4A-202	1320	374aa	ENSBTAP00000059119.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LIV4 A0A3Q1MHC1	-
ENSBTAT00000072146.2	ATG4A-203	1206	336aa	ENSBTAP00000066805.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M0Q0	-
ENSBTAT00000018239.6	ATG4A-205	1134	377aa	ENSBTAP00000018239.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3S5ZPE9	-

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Summary

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