Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: COL2A1 ENSBTAG00000013155

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Description

collagen type II alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:27564]

Location

Primary_assembly 5: 32,283,180-32,313,172 forward strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 3 transcripts (splice variants), 246 orthologues, 37 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000017505.6	COL2A1-201	4924	1487aa	ENSBTAP00000017505.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P02459	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000107158.1	COL2A1-203	4824	1396aa	ENSBTAP00000092204.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T0B9	-
ENSBTAT00000130023.1	COL2A1-202	4717	1418aa	ENSBTAP00000092672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T7E0	-

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Summary

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