Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: FOXN1 ENSBTAG00000013095

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Description

forkhead box N1 [Source:VGNC Symbol;Acc:VGNC:29095]

Location

Primary_assembly 19: 19,977,365-20,003,976 forward strand.

ARS-UCD1.3:CM008186.2

About this gene

This gene has 3 transcripts (splice variants), 191 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000073435.2	FOXN1-201	2334	689aa	ENSBTAP00000072147.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BJ25	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000071459.2	FOXN1-203	2245	644aa	ENSBTAP00000066392.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BJ25	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000017410.5	FOXN1-202	2202	645aa	ENSBTAP00000017410.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BJ25	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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