Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PCDH1 ENSBTAG00000012518

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Description

protocadherin 1 [Source:VGNC Symbol;Acc:VGNC:32615]

Location

Primary_assembly 7: 52,934,572-52,958,313 reverse strand.

ARS-UCD1.3:CM008174.2

About this gene

This gene has 5 transcripts (splice variants), 271 orthologues and 33 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000097401.1	PCDH1-201	4831	1237aa	ENSBTAP00000084280.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSBTAT00000103041.1	PCDH1-205	3910	1050aa	ENSBTAP00000091398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000083691.2	PCDH1-204	3827	1073aa	ENSBTAP00000062959.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M024	-
ENSBTAT00000016618.7	PCDH1-203	3733	1059aa	ENSBTAP00000016618.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6Q0C0	-
ENSBTAT00000126449.1	PCDH1-202	1278	382aa	ENSBTAP00000088862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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