Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLCN2 ENSBTAG00000012284

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Description

chloride voltage-gated channel 2 [Source:VGNC Symbol;Acc:VGNC:27396]

Location

Primary_assembly 1: 82,830,348-82,845,352 forward strand.

ARS-UCD1.3:CM008168.2

About this gene

This gene has 5 transcripts (splice variants), 219 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000105243.1	CLCN2-205	3042	886aa	ENSBTAP00000076235.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000114289.1	CLCN2-203	3158	862aa	ENSBTAP00000093464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000016291.7	CLCN2-204	3100	839aa	ENSBTAP00000016291.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6QNR5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000113043.1	CLCN2-202	2961	857aa	ENSBTAP00000096323.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000085667.2	CLCN2-201	2625	872aa	ENSBTAP00000069724.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MGM2	-

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Summary

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