Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: U2AF1 ENSBTAG00000011645

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Description

U2 small nuclear RNA auxiliary factor 1 [Source:NCBI gene (formerly Entrezgene);Acc:512680]

Location

Primary_assembly 1: 143,261,989-143,274,941 reverse strand.

ARS-UCD2.0:CM008168.2

About this gene

This gene has 3 transcripts (splice variants), 304 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000095545.1	U2AF1-203	858	285aa	ENSBTAP00000075723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RUC6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000015465.5	U2AF1-201	892	237aa	ENSBTAP00000015465.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1A4K8	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSBTAT00000068582.2	U2AF1-202	892	237aa	ENSBTAP00000070108.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M895	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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