Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ATP2C1 ENSBTAG00000011626

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Description

ATPase secretory pathway Ca2+ transporting 1 [Source:VGNC Symbol;Acc:VGNC:26296]

Location

Primary_assembly 1: 138,850,356-139,025,749 reverse strand.

ARS-UCD2.0:CM008168.2

About this gene

This gene has 5 transcripts (splice variants), 225 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000114603.1	ATP2C1-204	3203	953aa	ENSBTAP00000075186.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P57709	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000121444.1	ATP2C1-205	3561	919aa	ENSBTAP00000076084.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RXY9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000015441.5	ATP2C1-202	3403	950aa	ENSBTAP00000015441.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DIG3	-
ENSBTAT00000068713.2	ATP2C1-203	3220	888aa	ENSBTAP00000072313.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF7AP94	-
ENSBTAT00000109400.1	ATP2C1-201	2928	945aa	ENSBTAP00000102875.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TZZ0	-

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Summary

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