Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PKHD1 ENSBTAG00000011237

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Description

PKHD1 ciliary IPT domain containing fibrocystin/polyductin [Source:VGNC Symbol;Acc:VGNC:32939]

Location

Primary_assembly 23: 24,074,069-24,512,948 reverse strand.

ARS-UCD2.0:CM008190.2

About this gene

This gene has 4 transcripts (splice variants), 119 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000032221.6	PKHD1-203	13139	4045aa	ENSBTAP00000032158.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BK86	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000114663.1	PKHD1-204	13317	4014aa	ENSBTAP00000086746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SS08	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000081027.2	PKHD1-201	13079	4025aa	ENSBTAP00000068432.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MH90	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000081543.2	PKHD1-202	13031	4009aa	ENSBTAP00000058123.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LML7	-

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Summary

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