Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
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External references
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ID History
- Gene history

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Gene: HMBOX1 ENSBTAG00000010819

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Description

homeobox containing 1 [Source:VGNC Symbol;Acc:VGNC:29869]

Location

Primary_assembly 8: 9,648,252-9,839,295 reverse strand.

ARS-UCD1.3:CM008175.2

About this gene

This gene has 5 transcripts (splice variants) and 277 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000084663.2	HMBOX1-202	2577	444aa	ENSBTAP00000073632.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NM65	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000066390.2	HMBOX1-204	2466	407aa	ENSBTAP00000072579.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N4C1	-
ENSBTAT00000014352.6	HMBOX1-203	2219	420aa	ENSBTAP00000014352.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N4C1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000071418.2	HMBOX1-201	2111	385aa	ENSBTAP00000073209.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N4C1	-
ENSBTAT00000081600.2	HMBOX1-205	2016	413aa	ENSBTAP00000059561.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LR21	-

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Summary

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