Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
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ID History
- Gene history

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Gene: SCAPER ENSBTAG00000007382

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Description

S-phase cyclin A associated protein in the ER [Source:VGNC Symbol;Acc:VGNC:34321]

Location

Primary_assembly 21: 31,595,719-32,020,106 reverse strand.

ARS-UCD2.0:CM008188.2

About this gene

This gene has 5 transcripts (splice variants) and 207 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000125661.2	SCAPER-203	5421	1406aa	ENSBTAP00000075135.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RVV3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000125463.2	SCAPER-202	5329	1359aa	ENSBTAP00000099471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TSK9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000133152.1	SCAPER-201	5227	1377aa	ENSBTAP00000103220.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U0P3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000046397.6	SCAPER-205	5019	1296aa	ENSBTAP00000043704.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MRU6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000070609.3	SCAPER-204	4303	1354aa	ENSBTAP00000061402.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M0B5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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