Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SMAD4 ENSBTAG00000006919

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Description

SMAD family member 4 [Source:VGNC Symbol;Acc:VGNC:34977]

Location

Primary_assembly 24: 50,525,565-50,577,277 forward strand.

ARS-UCD2.0:CM008191.2

About this gene

This gene has 3 transcripts (splice variants), 280 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000009081.5	SMAD4-201	3287	553aa	ENSBTAP00000009081.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0JYL0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSBTAT00000071150.2	SMAD4-202	3287	553aa	ENSBTAP00000070080.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MHF2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000085906.2	SMAD4-203	2996	456aa	ENSBTAP00000066774.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N7M4	-

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Summary

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