Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: GRIA1 ENSBTAG00000005800

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Description

glutamate ionotropic receptor AMPA type subunit 1 [Source:VGNC Symbol;Acc:VGNC:29638]

Location

Primary_assembly 7: 64,771,836-65,119,012 forward strand.

ARS-UCD2.0:CM008174.2

About this gene

This gene has 4 transcripts (splice variants), 321 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000007628.8	GRIA1-202	4175	947aa	ENSBTAP00000007628.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N3G8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000113059.2	GRIA1-203	4052	906aa	ENSBTAP00000092309.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T8U7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000082647.3	GRIA1-201	4051	906aa	ENSBTAP00000060290.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G0T3G6	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000124729.2	GRIA1-204	3812	826aa	ENSBTAP00000099517.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TM26	-

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Summary

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