Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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- Breeds
  - Gene tree
  - Orthologues
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Ontologies
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Genetic Variation
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ID History
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Gene: STX18 ENSBTAG00000005712

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Description

syntaxin 18 [Source:VGNC Symbol;Acc:VGNC:35434]

Location

Primary_assembly 6: 104,587,343-104,706,029 forward strand.

ARS-UCD1.3:CM008173.2

About this gene

This gene has 4 transcripts (splice variants) and 212 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000098276.1	STX18-201	1369	339aa	ENSBTAP00000081963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000007503.6	STX18-202	2527	335aa	ENSBTAP00000007503.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PJR7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000114003.1	STX18-204	2467	313aa	ENSBTAP00000082110.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000122037.1	STX18-203	1973	331aa	ENSBTAP00000099452.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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