Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TPM1 ENSBTAG00000005373

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Description

tropomyosin 1 [Source:VGNC Symbol;Acc:VGNC:106994]

Location

Primary_assembly 10: 46,992,989-47,058,619 reverse strand.

ARS-UCD2.0:CM008177.2

About this gene

This gene has 10 transcripts (splice variants), 296 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000066573.2	TPM1-210	2574	457aa	ENSBTAP00000063733.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M1V8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000072971.2	TPM1-201	2574	457aa	ENSBTAP00000057222.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LFZ6	-
ENSBTAT00000067328.2	TPM1-202	2574	457aa	ENSBTAP00000062291.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N0N4	-
ENSBTAT00000113827.1	TPM1-206	2408	316aa	ENSBTAP00000103199.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9U1R4	-
ENSBTAT00000115591.1	TPM1-204	2313	364aa	ENSBTAP00000074659.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9RSQ1	-
ENSBTAT00000100322.2	TPM1-205	2288	358aa	ENSBTAP00000099946.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9TTT0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000044796.5	TPM1-203	2072	306aa	ENSBTAP00000042255.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6ZFK7	-
ENSBTAT00000077656.2	TPM1-208	1866	454aa	ENSBTAP00000065478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M5C0	-
ENSBTAT00000086339.2	TPM1-209	1770	457aa	ENSBTAP00000057423.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LQX6	-
ENSBTAT00000074743.3	TPM1-207	1317	368aa	ENSBTAP00000058989.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LPQ6	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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