Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
Phenotypes
Genetic Variation
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Pathway
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External references
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ID History
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Gene: CXCL12 ENSBTAG00000005077

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Description

C-X-C motif chemokine ligand 12 [Source:VGNC Symbol;Acc:VGNC:27848]

Location

Primary_assembly 28: 45,022,457-45,051,962 forward strand.

ARS-UCD1.3:CM008195.2

About this gene

This gene has 4 transcripts (splice variants) and 266 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000077980.2	CXCL12-202	1397	119aa	ENSBTAP00000066613.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M085	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000031279.5	CXCL12-201	1718	89aa	ENSBTAP00000031235.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0P5I9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000084977.2	CXCL12-203	1319	93aa	ENSBTAP00000065625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M5N8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000083508.2	CXCL12-204	964	117aa	ENSBTAP00000059999.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1LKC4	-

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Summary

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