Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PAPOLA ENSBTAG00000004054

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Description

poly(A) polymerase alpha [Source:NCBI gene (formerly Entrezgene);Acc:338051]

Location

Primary_assembly 21: 61,358,401-61,413,166 forward strand.

ARS-UCD2.0:CM008188.2

About this gene

This gene has 6 transcripts (splice variants), 199 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000063150.4	PAPOLA-201	4492	743aa	ENSBTAP00000054531.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P25500-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000154252.1	PAPOLA-203	4431	722aa	ENSBTAP00000104755.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000142833.1	PAPOLA-202	4355	697aa	ENSBTAP00000104077.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000070614.2	PAPOLA-205	3375	689aa	ENSBTAP00000070125.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P25500-2	-
ENSBTAT00000021001.5	PAPOLA-204	2988	739aa	ENSBTAP00000021001.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3T0A2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000005300.7	PAPOLA-206	2778	741aa	ENSBTAP00000005300.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6YLZ5	-

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Summary

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