Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SCN1B ENSBTAG00000003826

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Description

sodium voltage-gated channel beta subunit 1 [Source:VGNC Symbol;Acc:VGNC:34346]

Location

Primary_assembly 18: 45,771,264-45,781,390 forward strand.

ARS-UCD2.0:CM008185.2

About this gene

This gene has 3 transcripts (splice variants), 336 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000004980.7	SCN1B-202	1484	268aa	ENSBTAP00000004980.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF6YLR3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000133484.2	SCN1B-201	1662	218aa	ENSBTAP00000080632.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9S9M7 Q17QN4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000107438.1	SCN1B-203	1544	228aa	ENSBTAP00000092389.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9T919	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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