Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: HOXC10 ENSBTAG00000003278

.

Description

homeobox C10 [Source:VGNC Symbol;Acc:VGNC:56206]

Location

Primary_assembly 5: 26,042,191-26,047,529 reverse strand.

ARS-UCD2.0:CM008172.2

About this gene

This gene has 2 transcripts (splice variants), 199 orthologues and 42 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000070486.2	HOXC10-201	2263	373aa	ENSBTAP00000063935.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1N3B9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000004243.6	HOXC10-202	2081	342aa	ENSBTAP00000004243.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MY80	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

.

Summary

.

.