Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CLTA ENSBTAG00000001137

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Description

clathrin light chain A [Source:VGNC Symbol;Acc:VGNC:27469]

Location

Primary_assembly 8: 60,474,050-60,493,777 forward strand.

ARS-UCD2.0:CM008175.2

About this gene

This gene has 6 transcripts (splice variants), 213 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000001518.7	CLTA-201	1143	243aa	ENSBTAP00000001518.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P04973-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000131573.2	CLTA-203	2969	213aa	ENSBTAP00000084755.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAA9SLG2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000066509.1	CLTA-202	1085	231aa	ENSBTAP00000058861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P04973-3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000084231.3	CLTA-204	1047	225aa	ENSBTAP00000061205.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AAF7A244	-
ENSBTAT00000046425.5	CLTA-205	991	239aa	ENSBTAP00000043729.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DKD0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000055956.4	CLTA-206	847	191aa	ENSBTAP00000047748.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A452DJE9	-

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Summary

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