Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PCDH7 ENSBTAG00000000061

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Description

protocadherin 7 [Source:VGNC Symbol;Acc:VGNC:32621]

Location

Primary_assembly 6: 49,957,890-50,427,483 forward strand.

ARS-UCD1.3:CM008173.2

About this gene

This gene has 7 transcripts (splice variants), 209 orthologues and 33 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000090677.1	PCDH7-204	5034	1277aa	ENSBTAP00000086702.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000088860.1	PCDH7-205	4974	1257aa	ENSBTAP00000095131.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000000069.7	PCDH7-207	4613	1203aa	ENSBTAP00000000069.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BCK4	-
ENSBTAT00000130074.1	PCDH7-206	4205	1067aa	ENSBTAP00000092899.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000103200.1	PCDH7-203	3892	1230aa	ENSBTAP00000075944.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000117478.1	PCDH7-201	3841	1071aa	ENSBTAP00000078952.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000075153.2	PCDH7-202	3692	1161aa	ENSBTAP00000074162.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NN74	-

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Summary

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