Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TRIM39.2 ENSGALG00010002768

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Description

tripartite motif containing 39.2, MHCB region [Source:NCBI gene (formerly Entrezgene);Acc:417041]

Gene Synonyms

TRIM39

Location

Primary_assembly 16: 2,120,378-2,124,655 reverse strand.

bGalGal1.mat.broiler.GRCg7b:CM028497.1

About this gene

This gene has 3 transcripts (splice variants), 110 orthologues and 47 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010006414.1	TRIM39.2-201	2173	465aa	ENSGALP00010003965.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0XI42	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSGALT00010006416.1	TRIM39.2-202	2167	463aa	ENSGALP00010003966.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5HUK1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSGALT00010006411.1	TRIM39.2-203	1462	392aa	ENSGALP00010003963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0XBD5	-

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Summary

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