Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
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Gene: smg-4 WBGene00004882

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Description

UPF3 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:179371]

Location

Chromosome V: 9,775,935-9,777,745 reverse strand.

WBcel235:BX284605.5

About this gene

This gene has 2 transcripts (splice variants) and 414 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
F46B6.3b.1	smg-4-201	1368	368aa	F46B6.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8WQF3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
F46B6.3a.1	smg-4-202	1355	329aa	F46B6.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q20445	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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