Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PDLIM5 ENSXETG00000019217

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Description

PDZ and LIM domain 5 [Source:Xenbase;Acc:XB-GENE-854114]

Location

Primary_assembly 1: 76,400,034-76,525,826 reverse strand.

UCB_Xtro_10.0:CM004443.2

About this gene

This gene has 10 transcripts (splice variants), 287 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSXETT00000100441.2	PDLIM5-201	2702	884aa	ENSXETP00000097764.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6I8SHL5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSXETT00000089785.2	PDLIM5-202	2684	878aa	ENSXETP00000090425.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6I8RYN6	-
ENSXETT00000090465.2	PDLIM5-203	2654	868aa	ENSXETP00000064764.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6I8Q5H1	-
ENSXETT00000071930.2	PDLIM5-204	2270	740aa	ENSXETP00000078850.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6I8QZ56	-
ENSXETT00000070457.2	PDLIM5-208	2199	653aa	ENSXETP00000101277.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6I8T2I8	-
ENSXETT00000093391.2	PDLIM5-205	1931	627aa	ENSXETP00000100847.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6I8T2A2	-
ENSXETT00000089141.2	PDLIM5-206	1916	622aa	ENSXETP00000069300.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6I8QI58	-
ENSXETT00000041640.5	PDLIM5-207	1817	589aa	ENSXETP00000041640.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6W0S9	-
ENSXETT00000098141.2	PDLIM5-210	1803	353aa	ENSXETP00000070411.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6I8QCI5	-
ENSXETT00000066791.2	PDLIM5-209	1406	461aa	ENSXETP00000075491.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6I8QT87	-

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Summary

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