Transcript: ENSSSCT00000033688.5 TRIM40-204

Description

tripartite motif containing 40 [Source:VGNC Symbol;Acc:VGNC:94413]

Location

Primary_assembly 7: 22,702,927-22,714,537 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features and is associated with 920 variant alleles.

Gene

This transcript is a product of gene ENSSSCG00000001236.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000051045.3	TRIM40-205	2580	310aa	ENSSSCP00000049692.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8X9AES0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000098693.2	TRIM40-202	2261	241aa	ENSSSCP00000076910.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FC63	-
ENSSSCT00000033688.5	TRIM40-204	1780	310aa	ENSSSCP00000028552.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RZ46	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000107555.1	TRIM40-206	1682	241aa	ENSSSCP00000081946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSSSCT00000107556.1	TRIM40-207	1187	276aa	ENSSSCP00000081947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSSSCT00000107553.1	TRIM40-201	1123	98aa	ENSSSCP00000081945.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSSSCT00000107554.1	TRIM40-203	3891	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,780 bps, Translation length: 310 residues

Version

ENSSSCT00000033688.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Frameshift introns

Frameshift introns occur at intron number(s) 6.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSSSCT00000033688.5 TRIM40-204

Summary

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Transcript: ENSSSCT00000033688.5 TRIM40-204

Summary

About Us

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