Transcript: ENSSSCT00000023536.4 AMPH-201

Description

amphiphysin [Source:VGNC Symbol;Acc:VGNC:85289]

Location

Primary_assembly 9: 108,799,793-108,971,660 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 47 domains and features, is associated with 7916 variant alleles and maps to 12 oligo probes.

Gene

This transcript is a product of gene ENSSSCG00000024136.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000023536.4	AMPH-201	3304	678aa	ENSSSCP00000020487.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1CKU2 I3L8X6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000091364.2	AMPH-203	3232	654aa	ENSSSCP00000072496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R5I4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000091247.2	AMPH-202	3178	636aa	ENSSSCP00000074539.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RHA8 A0A8D1YMJ6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 3,304 bps, Translation length: 678 residues

Version

ENSSSCT00000023536.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSSSCT00000023536.4 AMPH-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSSSCT00000023536.4 AMPH-201

Summary

About Us

Get help

Our sister sites

Follow us