Transcript: ENSSSCT00000011759.5 C10orf90-202

Description

chromosome 14 C10orf90 homolog [Source:VGNC Symbol;Acc:VGNC:85942]

Location

About this transcript

This transcript has 11 exons, is annotated with 12 domains and features and is associated with 13212 variant alleles.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000011759.5	C10orf90-202	2971	791aa	ENSSSCP00000011457.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SDM2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000106170.1	C10orf90-201	2549	702aa	ENSSSCP00000078440.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FGT0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 2,971 bps, Translation length: 791 residues

Version

ENSSSCT00000011759.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Frameshift introns

Frameshift introns occur at intron number(s) 3.