Transcript: ENSSSCT00000007162.5 PBXIP1-201

Description

PBX homeobox interacting protein 1 [Source:VGNC Symbol;Acc:VGNC:109435]

Location

Primary_assembly 4: 94,832,270-94,847,299 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 19 domains and features, is associated with 503 variant alleles and maps to 35 oligo probes.

Gene

This transcript is a product of gene ENSSSCG00000006540.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000007162.5	PBXIP1-201	4874	732aa	ENSSSCP00000006969.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1HFA8 F1RGP4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000088599.1	PBXIP1-202	5683	723aa	ENSSSCP00000071897.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BL58 A0A8D1KX51	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000044869.2	PBXIP1-203	3622	723aa	ENSSSCP00000056809.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BL58 A0A8D1KX51	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 13, Coding exons: 10, Transcript length: 4,874 bps, Translation length: 732 residues

Version

ENSSSCT00000007162.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSSSCT00000007162.5 PBXIP1-201

Summary

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Transcript: ENSSSCT00000007162.5 PBXIP1-201

Summary

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