SRY-box transcription factor 6 [Source:VGNC Symbol;Acc:VGNC:93358]
Primary_assembly 2: 42,454,449-43,066,203 forward strand.
This transcript has 18 exons, is annotated with 25 domains and features, is associated with 8533 variant alleles and maps to 34 oligo probes.
This transcript is a product of gene ENSSSCG00000034191.3 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSSSCT00000060827.3 | SOX6-202 | 6708 | 843aa | ENSSSCP00000058306.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287BP63 A0A8D0QXK9 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000055966.2 | SOX6-205 | 8855 | 787aa | ENSSSCP00000038933.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287A4R3 A0A8D0NKQ0 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| ENSSSCT00000014619.5 | SOX6-203 | 6798 | 842aa | ENSSSCP00000014224.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8D0NKL3 F1S992 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000051326.3 | SOX6-204 | 6674 | 788aa | ENSSSCP00000042363.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287AEV3 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSSSCT00000044979.3 | SOX6-201 | 6555 | 804aa | ENSSSCP00000058907.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287BQJ8 A0A4X1TGL2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |