Transcript: ENSSSCT00000018063.5 PAX4-202

Description

paired box 4 [Source:VGNC Symbol;Acc:VGNC:91193]

Location

About this transcript

This transcript has 13 exons, is annotated with 22 domains and features and is associated with 749 variant alleles.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000086486.2	PAX4-201	1398	345aa	ENSSSCP00000071122.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W119 A0A8D1GTF2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000018063.5	PAX4-202	1365	334aa	ENSSSCP00000017575.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W3K5 A0A8D1F220	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 1,365 bps, Translation length: 334 residues

Version

ENSSSCT00000018063.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Frameshift introns

Frameshift introns occur at intron number(s) 11, 12.