Transcript: ENSSSCT00000029475.5 ARAP1-203

Description

ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 [Source:VGNC Symbol;Acc:VGNC:85439]

Location

Primary_assembly 9: 7,238,049-7,301,086 reverse strand.

About this transcript

This transcript has 36 exons, is annotated with 33 domains and features and is associated with 2675 variant alleles.

Gene

This transcript is a product of gene ENSSSCG00000014817.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000068276.3	ARAP1-204	5253	1456aa	ENSSSCP00000068888.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QVJ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000029475.5	ARAP1-203	5344	1445aa	ENSSSCP00000026120.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LPU3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000025648.5	ARAP1-202	5220	1445aa	ENSSSCP00000022964.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LFX1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000085702.3	ARAP1-201	4752	1200aa	ENSSSCP00000060382.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QQ18	-

Summary

Statistics

Exons: 36, Coding exons: 33, Transcript length: 5,344 bps, Translation length: 1,445 residues

Version

ENSSSCT00000029475.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Frameshift introns

Frameshift introns occur at intron number(s) 11.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENSSSCT00000029475.5 ARAP1-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSSSCT00000029475.5 ARAP1-203

Summary

About Us

Get help

Our sister sites

Follow us