Transcript: ENSSSCT00000001633.7 SLA-DMB-201

Description

MHC class II, DM beta [Source:NCBI gene (formerly Entrezgene);Acc:100135050]

Gene Synonyms

DMB

Location

Primary_assembly 7: 25,119,282-25,128,236 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 16 domains and features, is associated with 518 variant alleles and maps to 12 oligo probes.

Gene

This transcript is a product of gene ENSSSCG00000001469.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000107108.1	SLA-DMB-202	1368	275aa	ENSSSCP00000081504.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000001633.7	SLA-DMB-201	4524	263aa	ENSSSCP00000001591.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5D9L3 Q1W6C6	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000107109.1	SLA-DMB-203	1260	251aa	ENSSSCP00000081505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 4,524 bps, Translation length: 263 residues

Version

ENSSSCT00000001633.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]

upstream ATG

Transcript: ENSSSCT00000001633.7 SLA-DMB-201

Summary

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Transcript: ENSSSCT00000001633.7 SLA-DMB-201

Summary

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