Transcript: ENSSSCT00000037116.3 PTPRM-201

Description

protein tyrosine phosphatase receptor type M [Source:VGNC Symbol;Acc:VGNC:91992]

Location

About this transcript

This transcript has 32 exons, is annotated with 61 domains and features, is associated with 21841 variant alleles and maps to 12 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000037116.3	PTPRM-201	5302	1410aa	ENSSSCP00000043117.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AGX0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000046096.3	PTPRM-202	5395	1397aa	ENSSSCP00000032689.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZMK5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 32, Coding exons: 32, Transcript length: 5,302 bps, Translation length: 1,410 residues

Version

ENSSSCT00000037116.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.