Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ATRX ENSSSCG00000012434

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Description

ATRX chromatin remodeler [Source:VGNC Symbol;Acc:VGNC:85686]

Location

Primary_assembly X: 61,584,848-61,872,287 reverse strand.

Sscrofa11.1:CM000830.5

About this gene

This gene has 7 transcripts (splice variants), 250 orthologues and 30 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000013595.5	ATRX-205	10303	2486aa	ENSSSCP00000013229.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RPI9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000036604.4	ATRX-207	10192	2448aa	ENSSSCP00000030840.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7GSF7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000080565.2	ATRX-206	10126	2427aa	ENSSSCP00000074579.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RHD3	-
ENSSSCT00000027012.4	ATRX-204	10063	2411aa	ENSSSCP00000025270.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LME9	-
ENSSSCT00000087247.1	ATRX-201	9915	2428aa	ENSSSCP00000065665.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QNN1	-
ENSSSCT00000082719.2	ATRX-202	9672	2347aa	ENSSSCP00000065905.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R5N8	-
ENSSSCT00000036526.4	ATRX-203	6230	1958aa	ENSSSCP00000031072.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7GT30	-

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Summary

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