Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SNAI2 ENSSSCG00000039568

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Description

snail family transcriptional repressor 2 [Source:NCBI gene (formerly Entrezgene);Acc:102162332]

Location

Primary_assembly 4: 79,264,880-79,268,475 forward strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 2 transcripts (splice variants), 112 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000048563.2	SNAI2-202	1965	268aa	ENSSSCP00000037603.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U981 A0A8D0WXK8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000042681.3	SNAI2-201	2053	267aa	ENSSSCP00000039262.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A5W7 A0A4X1U8I1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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