Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LSP1 ENSSSCG00000031487

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Description

lymphocyte specific protein 1 [Source:VGNC Symbol;Acc:VGNC:89880]

Location

Primary_assembly 2: 1,262,079-1,295,887 forward strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 4 transcripts (splice variants), 208 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000066164.3	LSP1-203	1670	408aa	ENSSSCP00000042722.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AFG3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000052917.3	LSP1-201	1693	352aa	ENSSSCP00000056290.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BI62 A0A8D1ZJ23	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000059336.3	LSP1-204	1661	353aa	ENSSSCP00000037459.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A0K0 A0A4X1U929	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000078485.2	LSP1-202	1401	403aa	ENSSSCP00000065121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QJZ4 A0A8D1DTR2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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